Lyapunov Indices and the Poincare Mapping in a Study of the Stability of the Krebs Cycle
DOI:
https://doi.org/10.15407/ujpe60.06.0561Keywords:
Krebs cycle, metabolic process, self-organization, strange attractor, bifurcation, Feigenbaum scenarioAbstract
On the basis of a mathematical model, we continue the study of the metabolic Krebs cycle (or the tricarboxylic acid cycle). For the rst time, we consider its consistency and stability, which depend on the dissipation of a transmembrane potential formed by the respiratory chain in the plasmatic membrane of a cell. The phase-parametric characteristic of the dynamics of the ATP level depending on a given parameter is constructed. The scenario of formation of multiple autoperiodic and chaotic modes is presented. Poincare sections and mappings are constructed. The stability of modes and the fractality of the obtained bifurcations are studied. The full spectra of Lyapunov indices, divergences, KS-entropies, horizons of predictability, and Lyapunov dimensionalities of strange attractors are calculated. Some conclusions about the structural-functional connections determining the dependence of the cell respiration cyclicity on the synchronization of the functioning of the tricarboxylic acid cycle and the electron transport chain are presented.
References
B.P. Belousov, in: Autowave Processes in Systems with Diffusion (Gor'kii State Univ., Gor'kii, 1951), p. 76 (in Russian).
H.A. Krebs and W.A. Johnson, Enzymologia, No. 4, 148 (1937).
R. Bohnensack and E.E. Sel'kov, Studia biophys. 66, 47 (1977).
A.E. Lyubarev and B.I. Kurganov, Molekul. Biol. 21, 1286 (1987).
E.M.T. El-Mansi, G.C. Dawson, and C.F.A. Bryce, Comput. Appl. Biosci. 10, 295 (1994).
R. Ramakrishna, J.S. Edwards, A. McCulloch, and B.O. Palsson, Am. J. Physiol. Regul. Integr. Comp. Physiol. 280, R695 (2001).
S. Cortassa, M.A. Aon, E. Marban, R.L. Winslow, and B. O'Rourke, Biophys. J. 84, 2734 (2003).
http://dx.doi.org/10.1016/S0006-3495(03)75079-6
K. Yugi and M. Tomita, Bioinform. 20, 1795 (2004).
http://dx.doi.org/10.1093/bioinformatics/bth125
V.K. Singh and I. Ghosh, Theor. Biol. Med. Model. 3, 27 (2006).
http://dx.doi.org/10.1186/1742-4682-3-27
E. Mogilevskaya, O. Demin, and I. Goryanin, J. of Biol. Phys. 32(3-4), 245 (2006).
http://dx.doi.org/10.1007/s10867-006-9015-y
D.L. Nelson and M.M. Cox, Lehninger Principles of Biochemistry (Freeman, New York, 2008).
V.P. Gachok, Kinetics of Biochemical Processes (Naukova Dumka, Kiev, 1988) (in Russian).
V.P. Gachok, Strange Attractors in Biosystems (Naukova Dumka, Kiev, 1989) (in Russian).
J. Monod, Recherches sur la Croissanse des Cultures Bacteriennes (Hermann, Paris, 1942).
V.S. Podgorskii, Physiology and Metabolism of MethanolConsuming Yeast (Naukova Dumka, Kiev, 1982) (in Russian).
L.N. Drozdov-Tikhomirov and N.T. Rakhimova, Mikrobiol. 55, 775 (1986).
G.Yu. Riznichenko, Mathematical Models in Biophysics and Ecology (Inst. of Computer Studies, Moscow–Izhevsk, 2003) (in Russian).
C.M. Watteeuw, W.B. Armiger, D.L. Ristroph, and A.E. Humphrey, Biotechnol. Bioeng. 21, 1221 (1979).
http://dx.doi.org/10.1002/bit.260210711
W.B. Armiger, A.R. Moreira, J.A. Phillips, and A.E. Humphrey, in: Utilization of Cellulose Materials in Inconventional Food Production (Plenum, New York, 1979), p. 111.
V.I. Grytsay and I.V. Musatenko, Ukr. Biokhim. Zh. 85, 191 (2013).
V. Grytsay and I. Musatenko, in: Chaotic Modeling and Simulation (CMSIM) (2014), Vol. 3, p. 207.
E.E. Selkov, Europ. J. Biochem. 4, 79 (1968).
http://dx.doi.org/10.1111/j.1432-1033.1968.tb00175.x
B. Hess and A. Boiteux, Annu. Rev. Biochem. 40, 237 (1971).
http://dx.doi.org/10.1146/annurev.bi.40.070171.001321
A. Goldbeter and R. Lefer, Biophys. J. 12, 1302 (1972).
http://dx.doi.org/10.1016/S0006-3495(72)86164-2
A. Godlbeter and R. Caplan, Annu. Rev. Biophys. Bioeng. 5, 449 (1976).
http://dx.doi.org/10.1146/annurev.bb.05.060176.002313
Chaos in Chemical and Biochemical Systems, edited by R. Field and L. Gy¨orgyi (World Scientific, Singapore, 1993).
P. Mitchell, FEBS Lett. 43, 189 (1974).
http://dx.doi.org/10.1016/0014-5793(74)80997-X
V.S. Anishchenko, Complex Oscillations in Simple Systems(Nauka, Moscow, 1990) (in Russian).
S.P. Kuznetsov, Dynamical Chaos (Fiz.-Mat. Nauka, Moscow, 2001) (in Russian).
V.P. Gachok and V.I. Grytsay, Dokl. Akad. Nauk SSSR 282, 51 (1985).
V.P. Gachok, V.I. Grytsay, A.Yu. Arinbasarova, A.G. Medentsev, K.A. Koshcheyenko, and V.K. Akimenko, Biotechn. Bioengin. 33, 661 (1989).
http://dx.doi.org/10.1002/bit.260330602
V.P. Gachok, V.I. Grytsay, A.Yu. Arinbasarova, A.G. Medentsev, K.A. Koshcheyenko, and V.K. Akimenko, Biotechn. Bioengin. 33, 668 (1989).
http://dx.doi.org/10.1002/bit.260330603
V.I. Grytsay, Dopov. Nats. Akad. Nauk Ukr., No. 2, 175 (2000).
V.I. Grytsay, Dopov. Nats. Akad. Nauk Ukr., No. 3, 201 (2000).
V.I. Grytsay, Dopov. Nats. Akad. Nauk Ukr., No. 11, 112 (2000).
V.I. Grytsay, Ukr. J. Phys. 46, 124 (2001).
V.V. Andreev and V.I. Grytsay, Matem. Modelir. 17, No. 2, 57 (2005).
V.V. Andreev and V.I. Grytsay, Matem. Modelir. 17, No. 6, 3 (2005).
V.I. Grytsay and V.V. Andreev, Matem. Modelir. 18, No. 12, 88 (2006).
V.I. Grytsay, Medium. Romanian J. Biophys. 17, 55 (2007).
V.I. Grytsay, Biofiz. Visn., No. 2, 92 (2007).
V.I. Grytsay, Biofiz. Visn., No. 2, 25 (2008).
V.I. Grytsay, Ukr. J. Phys. 55, 599 (2010).
V.I. Grytsay and I.V. Musatenko, Ukr. Biochem. J. 85, 93 (2013).
http://dx.doi.org/10.15407/ubj85.02.093
V.I. Grytsay and I.V. Musatenko, Ukr. J. Phys. 58, 677 (2013).
http://dx.doi.org/10.15407/ujpe58.07.0677
V.I. Grytsay and I.V. Musatenko, in: Self-Organization and Chaos, Chaotic Modeling and Simulation (CMSIM), No. 4, 539 (2013).
V.I. Grytsay and I.V. Musatenko, Biopolym. Cell 30, 404 (2014).
http://dx.doi.org/10.7124/bc.0008B9
M.J. Feigenbaum, J. Stat. Phys. 19, 25 (1978).
http://dx.doi.org/10.1007/BF01020332
A.N. Kolmogorov, Dokl. Akad. Nauk SSSR 154, 754 (1959).
Ya.B. Pesin, Usp. Mat. Nauk. 32, No. 4, 55 (1977).
J.L. Kaplan and J.A. Yorke, Ann. N. Y. Acad. Sci. 316, 400 (1979).
http://dx.doi.org/10.1111/j.1749-6632.1979.tb29484.x
J.L. Kaplan and J.A. Yorke, in: Functional Differential Equations of Fixed Points, edited by H.O. Peitgen, H.O. Walther (Springer, Berlin, 1979), Vol. 730, p. 204.
Downloads
Published
Issue
Section
License
Copyright Agreement
License to Publish the Paper
Kyiv, Ukraine
The corresponding author and the co-authors (hereon referred to as the Author(s)) of the paper being submitted to the Ukrainian Journal of Physics (hereon referred to as the Paper) from one side and the Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine, represented by its Director (hereon referred to as the Publisher) from the other side have come to the following Agreement:
1. Subject of the Agreement.
The Author(s) grant(s) the Publisher the free non-exclusive right to use the Paper (of scientific, technical, or any other content) according to the terms and conditions defined by this Agreement.
2. The ways of using the Paper.
2.1. The Author(s) grant(s) the Publisher the right to use the Paper as follows.
2.1.1. To publish the Paper in the Ukrainian Journal of Physics (hereon referred to as the Journal) in original language and translated into English (the copy of the Paper approved by the Author(s) and the Publisher and accepted for publication is a constitutive part of this License Agreement).
2.1.2. To edit, adapt, and correct the Paper by approval of the Author(s).
2.1.3. To translate the Paper in the case when the Paper is written in a language different from that adopted in the Journal.
2.2. If the Author(s) has(ve) an intent to use the Paper in any other way, e.g., to publish the translated version of the Paper (except for the case defined by Section 2.1.3 of this Agreement), to post the full Paper or any its part on the web, to publish the Paper in any other editions, to include the Paper or any its part in other collections, anthologies, encyclopaedias, etc., the Author(s) should get a written permission from the Publisher.
3. License territory.
The Author(s) grant(s) the Publisher the right to use the Paper as regulated by sections 2.1.1–2.1.3 of this Agreement on the territory of Ukraine and to distribute the Paper as indispensable part of the Journal on the territory of Ukraine and other countries by means of subscription, sales, and free transfer to a third party.
4. Duration.
4.1. This Agreement is valid starting from the date of signature and acts for the entire period of the existence of the Journal.
5. Loyalty.
5.1. The Author(s) warrant(s) the Publisher that:
– he/she is the true author (co-author) of the Paper;
– copyright on the Paper was not transferred to any other party;
– the Paper has never been published before and will not be published in any other media before it is published by the Publisher (see also section 2.2);
– the Author(s) do(es) not violate any intellectual property right of other parties. If the Paper includes some materials of other parties, except for citations whose length is regulated by the scientific, informational, or critical character of the Paper, the use of such materials is in compliance with the regulations of the international law and the law of Ukraine.
6. Requisites and signatures of the Parties.
Publisher: Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine.
Address: Ukraine, Kyiv, Metrolohichna Str. 14-b.
Author: Electronic signature on behalf and with endorsement of all co-authors.










