The Structure of a Chaos of Strange Attractors within a Mathematical Model of the Metabolism of a Cell
DOI:
https://doi.org/10.15407/ujpe58.07.0677Keywords:
metabolism of a cell, attractors, Lyapunov dimensions, KS-entropies, structure of the chaosAbstract
This work continues the study of the earlier constructed mathematical model of the metabolic process running in a cell. We will consider autooscillations arising on the level of enzyme-substrate interactions in the nutrient and respiratory chains, which leads to the self-organization in autocatalysis of the integral metabolic process in cells. The autooscillations organize themselves in the total metabolic process of cells at autocatalysis. The behavior of the phase-parametric characteristic under a high dissipation of the kinetic membrane potential is analyzed. All possible oscillatory modes of the system and the scenario of formation and destruction of regular and strange attractors are studied. The bifurcations of the transitions “order-chaos”, “chaos-order”, “chaos-chaos” and “order-order” are calculated. The total spectra of Lyapunov indices and the divergences for all types of attractors on a part of the phase-parametric characteristic under consideration are determined. For various types of strange attractors, their Lyapunov dimensions, Kolmogorov–Sinai-entropies (KS-entropies), and “predictability horizons” are calculated. Some conclusions about the structure of the chaos of strange attractors and its influence on the stability of the metabolic process in a cell are drawn.
References
<li> E.E. Selkov, Europ. J. Biochem. 4, 79 (1968).
<a href="https://doi.org/10.1111/j.1432-1033.1968.tb00175.x">https://doi.org/10.1111/j.1432-1033.1968.tb00175.x</a>
</li>
<li> B. Hess and A. Boiteux, Annu. Rev. Biochem. 40, 237 (1971).
<a href="https://doi.org/10.1146/annurev.bi.40.070171.001321">https://doi.org/10.1146/annurev.bi.40.070171.001321</a>
</li>
<li> A. Goldbeter and R. Lefer, Biophys J. 12, 1302 (1972).
<a href="https://doi.org/10.1016/S0006-3495(72)86164-2">https://doi.org/10.1016/S0006-3495(72)86164-2</a>
</li>
<li> A. Godlbeter and R. Caplan, Annu. Rev. Biophys. Bioeng. 5, 449 (1976).
<a href="https://doi.org/10.1146/annurev.bb.05.060176.002313">https://doi.org/10.1146/annurev.bb.05.060176.002313</a>
</li>
<li> V.P. Gachok, A.Yu. Arinbasarova, K.A. Koshcheyenko, A.G. Medentsev, and V.K. Akimenko, Applied Biochem. and Microbiol. XXIV, No. 3, 380 (1988).
</li>
<li> V.P. Gachok, A.Yu. Arinbasarova, V.I Grytsay, A.G. Medentsev, K.A. Koshcheyenko, and V.K. Akimenko, Applied Biochem. and Microbiol. XXIV, No. 3, 389 (1988).
</li>
<li> V.P. Gachok, V.I. Grytsay, A.Yu. Arinbasarova, A.G. Medentsev, K.A. Koshcheyenko, and V.K. Akimenko, Biotechn. and Bioengin. 33, 661 (1989).
<a href="https://doi.org/10.1002/bit.260330602">https://doi.org/10.1002/bit.260330602</a>
</li>
<li> V.P. Gachok, V.I. Grytsay, A.Yu. Arinbasarova, A.G. Medentsev, K.A. Koshcheyenko, and V.K. Akimenko, Biotechn. and Bioengin. 33, 668 (1989).
<a href="https://doi.org/10.1002/bit.260330603">https://doi.org/10.1002/bit.260330603</a>
</li>
<li> V.P. Gachok and V.I. Grytsay, Dokl. AN SSSR 282, 51 (1985).
</li>
<li> A.G. Dorofeev, M.V. Glagolev, T.F. Bondarenko, and N.S. Panikov, Mikrobiol. 61, 33 (1992).
</li>
<li> A.S. Skichko, Dissertation of Ph.D. (Techn. Sci.) (Chemical Techn. Univ., Moscow, 2002).
</li>
<li> A.S. Skichko and E.M. Koltsova, Teor. Osnov. Khimich. Tekhn. 40, 540 (2006).
</li>
<li> V.I. Grytsay, Dopov. NAN Ukr. No. 2, 175 (2000).
</li>
<li> V.I. Grytsay, Dopov. NAN Ukr. No. 3, 201 (2000).
</li>
<li> V.I. Grytsay, Dopov. NAN Ukr. No. 11, 112 (2000).
</li>
<li> V.V. Andreev and V.I. Grytsay, Matem. Modelir. 17, No. 2, 57 (2005).
</li>
<li> V.V. Andreev and V.I. Grytsay, Matem. Modelir. 17, No. 6, 3 (2005).
</li>
<li> V.I. Grytsay and V.V. Andreev, Matem. Modelir. 18, No. 12, 88 (2006).
</li>
<li> V.I. Grytsay, Romanian J. Biophys. 17, 55 (2007).
</li>
<li> V.I. Grytsay, Biofiz. Visn. 19, No. 2, 92 (2007).
</li>
<li> V.I. Grytsay, Biofiz. Visn. 20, No. 1, 48 (2008).
</li>
<li> V.I. Grytsay, Biofiz. Visn. 23, No. 2, 77 (2009).
</li>
<li> V.I. Grytsay, Ukr. J. Phys. 55, 599 (2010).
</li>
<li> V.I. Grytsay and I.V. Musatenko, Ukr. Biochem. J. 85, No. 2, 93 (2013).
<a href="https://doi.org/10.15407/ubj85.02.093">https://doi.org/10.15407/ubj85.02.093</a>
</li>
<li> J.L. Kaplan and J.A. Yorke, Ann. N. Y. Acad. Sci. 316, 400 (1979).
<a href="https://doi.org/10.1111/j.1749-6632.1979.tb29484.x">https://doi.org/10.1111/j.1749-6632.1979.tb29484.x</a>
</li>
<li> J.L. Kaplan and J.A. Yorke, in Functional Differential Equations and Approximations of Fixed Points, edited by H.O. Peitgen and H.O. Walther (Springer, Berlin, 1979), p. 228.
<a href="https://doi.org/10.1007/BFb0064320">https://doi.org/10.1007/BFb0064320</a>
</li>
<li> A.N. Kolmogorov, DAN SSSR 154, 754 (1959).
</li>
<li> S.P. Kuznetsov, Dynamical Chaos (Fizmatlit, Moscow, 2001) (in Russian).
</li>
<li> Ya.B. Pesin, Uspekhi Mat. Nauk 32, No. 4, 55 (1977).
</li>
<li> P. Berge, Y. Pomeau, and C.H. Vidal, Order within Chaos (Wiley, New York, 1984).
</li>
<li> P. Manneville and Y. Pomeau, Phys. Lett. A. 75, 1 (1979).
<a href="https://doi.org/10.1016/0375-9601(79)90255-X">https://doi.org/10.1016/0375-9601(79)90255-X</a>
</li>
<li> P. Manneville and Y. Pomeau, Phys. D.: Nonlin. Phen. 1, 219 (1980).
<a href="https://doi.org/10.1016/0167-2789(80)90013-5">https://doi.org/10.1016/0167-2789(80)90013-5</a>
</li>
<li> P. Manneville and Y. Pomeau, Comm. Math. Phys. 74, 189 (1980).
<a href="https://doi.org/10.1007/BF01197757">https://doi.org/10.1007/BF01197757</a>
</li>
</ol>
Downloads
Published
How to Cite
Issue
Section
License
Copyright Agreement
License to Publish the Paper
Kyiv, Ukraine
The corresponding author and the co-authors (hereon referred to as the Author(s)) of the paper being submitted to the Ukrainian Journal of Physics (hereon referred to as the Paper) from one side and the Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine, represented by its Director (hereon referred to as the Publisher) from the other side have come to the following Agreement:
1. Subject of the Agreement.
The Author(s) grant(s) the Publisher the free non-exclusive right to use the Paper (of scientific, technical, or any other content) according to the terms and conditions defined by this Agreement.
2. The ways of using the Paper.
2.1. The Author(s) grant(s) the Publisher the right to use the Paper as follows.
2.1.1. To publish the Paper in the Ukrainian Journal of Physics (hereon referred to as the Journal) in original language and translated into English (the copy of the Paper approved by the Author(s) and the Publisher and accepted for publication is a constitutive part of this License Agreement).
2.1.2. To edit, adapt, and correct the Paper by approval of the Author(s).
2.1.3. To translate the Paper in the case when the Paper is written in a language different from that adopted in the Journal.
2.2. If the Author(s) has(ve) an intent to use the Paper in any other way, e.g., to publish the translated version of the Paper (except for the case defined by Section 2.1.3 of this Agreement), to post the full Paper or any its part on the web, to publish the Paper in any other editions, to include the Paper or any its part in other collections, anthologies, encyclopaedias, etc., the Author(s) should get a written permission from the Publisher.
3. License territory.
The Author(s) grant(s) the Publisher the right to use the Paper as regulated by sections 2.1.1–2.1.3 of this Agreement on the territory of Ukraine and to distribute the Paper as indispensable part of the Journal on the territory of Ukraine and other countries by means of subscription, sales, and free transfer to a third party.
4. Duration.
4.1. This Agreement is valid starting from the date of signature and acts for the entire period of the existence of the Journal.
5. Loyalty.
5.1. The Author(s) warrant(s) the Publisher that:
– he/she is the true author (co-author) of the Paper;
– copyright on the Paper was not transferred to any other party;
– the Paper has never been published before and will not be published in any other media before it is published by the Publisher (see also section 2.2);
– the Author(s) do(es) not violate any intellectual property right of other parties. If the Paper includes some materials of other parties, except for citations whose length is regulated by the scientific, informational, or critical character of the Paper, the use of such materials is in compliance with the regulations of the international law and the law of Ukraine.
6. Requisites and signatures of the Parties.
Publisher: Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine.
Address: Ukraine, Kyiv, Metrolohichna Str. 14-b.
Author: Electronic signature on behalf and with endorsement of all co-authors.