Analysis of Synaptic Signal Transmission Based on a Kinetic Model
DOI:
https://doi.org/10.15407/ujpe69.1.37Keywords:
synapse, mediator, receptor, exocytosis, impulseAbstract
We will analyze the peculiarities of the nerve signal transmission through a synaptic cleft (a contact between two neurons). The corresponding analysis is performed using a kinetic model that is based on a system of nonlinear differential equations of the first order and makes it possible to calculate the number of activated receptors on the postsynaptic membrane and the amount of mediator in the synaptic cleft. The model combines simplicity and functionality, which allows obtaining the qualitative results comparable to available experimental data and the results of other theoretical studies. It has been shown that the model correctly describes the process of signal transmission through the synaptic cleft at a qualitative level. Exact (numerical) and approximate (analytic) solutions for the number of activated receptors on the postsynaptic membrane and the amount of a mediator in the synaptic cleft are obtained and analyzed. The stability of stationary states is considered and proved in the framework of the proposed model, which confirms the self-consistency of the model and the possibility of its use for simulating the signal transmission through the synapse.
References
A.L. Hodgkin, A.F. Huxley. A quantitative description of membrane current and its application to conduction and 507 excitation in nerve. J. Physiol. 117, 500 (1952).
https://doi.org/10.1113/jphysiol.1952.sp004764
B. Katz, R. Miledi. The measurement of synaptic delay, and the time course of acetylcholine release at the 516 neuromuscular junction. Proc. R. Soc. Lond. B Bio. 161, 483 (1965).
https://doi.org/10.1098/rspb.1965.0016
Z.M. Bacq. Chemical Transmission of Nerve Impulses: A Historical Sketch (Pergamon, 1975).
https://doi.org/10.1016/B978-0-08-020512-0.50009-9
H.W. Davenport. Early history of the concept of chemical transmission of the nerve impulse. Physiologist 34, 129 (1991).
A.V. Chalyi, L.M. Chernenko. Phase transition in finitesize systems and synaptic transmission. In: Dynamical Phenomena at Interfaces, Surfaces, and Membranes (Nowa Science Publishers, 1993), p. 457.
T.C. S¨udhof, R.C. Malenka. Understanding synapses: Past, present, and future. Neuron 60, 469 (2008).
https://doi.org/10.1016/j.neuron.2008.10.011
M.R. Bennett. History of the Synapse (Harwood Academic Publishers, 2001).
https://doi.org/10.4324/9780203302545
S.O. Rizzoli, W.J. Betz. Synaptic vesicle pools. Nature Rev. Neurosci. 6, 57 (2005).
https://doi.org/10.1038/nrn1583
B. Wang, O.K. Dudko. A theory of synaptic transmission. eLife 10, e73585 (2021).
https://doi.org/10.7554/eLife.73585
D.G. Aronson, H.F. Weinberger. Nonlinear diffusion in population genetics, combustion and nerve pulse propagation. In: Partial Differential Equations and Related Topics. Edited by J.A. Goldstein (Springer, 1975), p. XXXXX.
https://doi.org/10.1007/BFb0070595
P. Grindrod. The Theory and Applications of ReactionDiffusion Equations (Clarendon Press, 1996).
D.A. Gavryushenko, K.V. Cherevko, V.M. Sysoev. The influence of the chemical reactions on the diffusion phenomena in the cylincrical systems bounded with the membranes. J. Mol. Liq. 127, 1 (2006).
https://doi.org/10.1016/j.molliq.2006.03.018
K.V. Cherevko, D.A. Gavryushenko, O.V. Korobko, V.M. Sysoev. Entropy production in the diffusion of a Margules solution in a flat-parallel pore. Ukr. J. Phys. 58, 10 (2013).
https://doi.org/10.15407/ujpe58.10.0988
K.V. Cherevko, D.A. Gavryushenko, L.A. Bulavin. Entropy production in a model biological system with facilitated diffusion Ukr. J. Phys. 66, 8 (2021).
https://doi.org/10.15407/ujpe66.8.714
J. Trommershauser, R. Schneggenburger, A. Zippelius, E. Nehery. Heterogeneous presynaptic release probabilities: Functional relevance for short-term plasticity. Biophys. J. 84, 1563 (2003).
https://doi.org/10.1016/S0006-3495(03)74967-4
J. Lichtenberger, P. Fromherz. A cell-semiconductor synapse: Transistor recording of vesicle release in chromaffin cells. Biophys. J. 92, 2266 (2007).
https://doi.org/10.1529/biophysj.106.096446
K. Zheng, A. Scimemi, D.A. Rusakov. Receptor actions of synaptically released glutamate: The role of transporters on the scale from nanometers to microns. Biophys. J. 95, 4584 (2008).
https://doi.org/10.1529/biophysj.108.129874
E. Neher. What is rate-limiting during sustained synaptic activity: Vesicle supply or the availability of release sites. Frontier. Synapt. Neurosci. 2, 144 (2010).
https://doi.org/10.3389/fnsyn.2010.00144
P.S. Kaeser, W.G. Regehr. Molecular mechanisms for synchronous, asynchronous, and spontaneous neurotransmitter release. Annu. Rev. Physiol. 76, 333 (2014).
https://doi.org/10.1146/annurev-physiol-021113-170338
D.H. Kweon, B. Kong, Y.K. Shin. Hemifusion in synaptic vesicle cycle. Frontier. Mol. Neurosci. 10, 65 (2017).
https://doi.org/10.3389/fnmol.2017.00065
M.V. Gramlich, V.A. Klyachko. Nanoscale organization of vesicle release at central synapses. Trend. Neurosci. 42, 425 (2019).
https://doi.org/10.1016/j.tins.2019.03.001
R.W. Holz, S.K. Fisher. Synaptic transmission and cellular signaling: An overview. In: Basic Neurochemistry (Elsevier, 2012), p. 235.
https://doi.org/10.1016/B978-0-12-374947-5.00012-2
A.V. Chalyi, E.V. Zaitseva. Strange attractor in kinetic model of synaptic transmission. J. Phys. Stud. 11, 322 (2007).
https://doi.org/10.30970/jps.11.322
O.V. Chalyi, O.V. Zaitseva. A kinetic model of synaptic transmission on intercell interaction. Ukr. J. Phys. 54, 366 (2009).
A.N. Vasilev, A.V. Chalyi. Cooperative operation mode of a synaptic channel. Ukr. J. Phys. 54, 1183 (2009).
O.M. Vasiliev, S.V. Kyslyak. Two-pool kinetic model of synapse activation. J. Phys. Res. 14, 4801 (2010).
https://doi.org/10.30970/jps.14.4801
SI. Braychenko, O.M. Vasiliev. Modeling the activation of the postsynaptic membrane. J. Phys. Res. 16, 4802 (2012).
https://doi.org/10.30970/jps.16.4802
A.V. Chalyi, A.N. Vasilev, E.V. Zaitseva. Synaptic transmission as a cooperative phenomenon in confined systems. Condens. Matter Phys. 20, 13804 (2017).
https://doi.org/10.5488/CMP.20.13804
O.M. Vasiliev, O.M. Hvyl. Pool model of mediator exocytosis into the synapse. Ukr. J. Phys. 64, 9 (2019).
https://doi.org/10.15407/ujpe64.9.829
O.V. Kulish, A.N. Vasilev. Modeling the nerve impuls transmission in a synaptic cleft. J. Phys. Stud. 23, 1 (2019).
https://doi.org/10.30970/jps.23.1801
S.Yu. Ushcats, M.V. Ushcats, V.M. Sysoev, D.A. Gavryushenko. Approximation of cluster integrals for various lattice-gas models. Ukr. J. Phys. 63, 12 (2019).
https://doi.org/10.15407/ujpe63.12.1066
L.A. Bulavin, K.V. Cherevko, D.A. Gavryushenko, V.M. Sysoev, T.S. Vlasenko. Radiation influence on the temperature-dependent parameters of fluids. Phys. Rev. E 93, 3 (2016).
https://doi.org/10.1103/PhysRevE.93.032133
A.V. Chalyi, A.N. Vasil'ev. Correlation properties, critical parameters and critical light scattering in finite-size systems. J. Mol. Liq. 84, 2 (2000).
https://doi.org/10.1016/S0167-7322(99)00187-7
A.V. Chalyi, K.A. Chaliy, L.M. Chernenko, A.N. Vasil'ev. Critical phenomena in finite-size binary liquid mixtures with reduced geometry. J. Mol. Liq. 93, 1 (2001).
Downloads
Published
How to Cite
Issue
Section
License
Copyright Agreement
License to Publish the Paper
Kyiv, Ukraine
The corresponding author and the co-authors (hereon referred to as the Author(s)) of the paper being submitted to the Ukrainian Journal of Physics (hereon referred to as the Paper) from one side and the Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine, represented by its Director (hereon referred to as the Publisher) from the other side have come to the following Agreement:
1. Subject of the Agreement.
The Author(s) grant(s) the Publisher the free non-exclusive right to use the Paper (of scientific, technical, or any other content) according to the terms and conditions defined by this Agreement.
2. The ways of using the Paper.
2.1. The Author(s) grant(s) the Publisher the right to use the Paper as follows.
2.1.1. To publish the Paper in the Ukrainian Journal of Physics (hereon referred to as the Journal) in original language and translated into English (the copy of the Paper approved by the Author(s) and the Publisher and accepted for publication is a constitutive part of this License Agreement).
2.1.2. To edit, adapt, and correct the Paper by approval of the Author(s).
2.1.3. To translate the Paper in the case when the Paper is written in a language different from that adopted in the Journal.
2.2. If the Author(s) has(ve) an intent to use the Paper in any other way, e.g., to publish the translated version of the Paper (except for the case defined by Section 2.1.3 of this Agreement), to post the full Paper or any its part on the web, to publish the Paper in any other editions, to include the Paper or any its part in other collections, anthologies, encyclopaedias, etc., the Author(s) should get a written permission from the Publisher.
3. License territory.
The Author(s) grant(s) the Publisher the right to use the Paper as regulated by sections 2.1.1–2.1.3 of this Agreement on the territory of Ukraine and to distribute the Paper as indispensable part of the Journal on the territory of Ukraine and other countries by means of subscription, sales, and free transfer to a third party.
4. Duration.
4.1. This Agreement is valid starting from the date of signature and acts for the entire period of the existence of the Journal.
5. Loyalty.
5.1. The Author(s) warrant(s) the Publisher that:
– he/she is the true author (co-author) of the Paper;
– copyright on the Paper was not transferred to any other party;
– the Paper has never been published before and will not be published in any other media before it is published by the Publisher (see also section 2.2);
– the Author(s) do(es) not violate any intellectual property right of other parties. If the Paper includes some materials of other parties, except for citations whose length is regulated by the scientific, informational, or critical character of the Paper, the use of such materials is in compliance with the regulations of the international law and the law of Ukraine.
6. Requisites and signatures of the Parties.
Publisher: Bogolyubov Institute for Theoretical Physics, National Academy of Sciences of Ukraine.
Address: Ukraine, Kyiv, Metrolohichna Str. 14-b.
Author: Electronic signature on behalf and with endorsement of all co-authors.